Single Nucleotide Polymorphisms (SNPs) identified from 7 high fiber producing animals and 7 low fiber produing animals.

Pashmina fiber SNP dataset


Total SNPs identified 1.102 Million Click here for chromosomal distribution of SNPs
HIGH Impact SNPs 40,000 exon_loss_variant
frameshift_variant
start_lost
stop_gained
stop_lost
MODERATE Impact SNPs 2.89 Million 3_prime_UTR_truncation & exon_loss
5_prime_UTR_truncation & exon_loss_variant
coding_sequence_variant
conservative_inframe_deletion
conservative_inframe_insertion
disruptive_inframe_deletion
disruptive_inframe_insertion
missense_variant
regulatory_region_ablation
splice_region_variant
LOW 4.41 5_prime_UTR_premature_start_codon_gain_variant
initiator_codon_variant
splice_region_variant
start_retained
stop_retained_variant
synonymous_variant
MODIFIER 3.1 Million 3_prime_UTR_variant
5_prime_UTR_variant
coding_sequence_variant
conserved_intergenic_variant
conserved_intron_variant
downstream_gene_variant
exon_variant
feature_elongation
feature_truncation
gene_variant
intergenic_region
intragenic_variant
intron_variant
mature_miRNA_variant
miRNA
NMD_transcript_variant
non_coding_transcript_exon_variant
non_coding_transcript_variant
regulatory_region_amplification
regulatory_region_variant
TF_binding_site_variant
TFBS_amplification
transcript_amplification
transcript_variant
upstream_gene_variant
High Impact SNPs with lowest Gibbs free energy
Using SIFT & poly-Phen score		 6548 Click here
SNPs validated using MD simulations 95 - Potential SNPs related to high Pashmina production. Click here